scib_rapids.ilisi_knn

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scib_rapids.ilisi_knn#

scib_rapids.ilisi_knn(X, batches, perplexity=None, scale=True)[source]#

Compute the integration LISI (iLISI).

Parameters:

  • X (NeighborsResults) – A NeighborsResults object.

  • batches (ndarray) – Array of shape (n_cells,) representing batch values.

  • perplexity (float (default: None)) – Parameter controlling effective neighborhood size.

  • scale (bool (default: True)) – Scale lisi into the range [0, 1].

Return type:

float

Returns:

ilisi score

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