scib_rapids.clisi_knn

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scib_rapids.clisi_knn#

scib_rapids.clisi_knn(X, labels, perplexity=None, scale=True)[source]#

Compute the cell-type LISI (cLISI).

Parameters:

  • X (NeighborsResults) – A NeighborsResults object.

  • labels (ndarray) – Array of shape (n_cells,) representing cell type label values.

  • perplexity (float (default: None)) – Parameter controlling effective neighborhood size.

  • scale (bool (default: True)) – Scale lisi into the range [0, 1].

Return type:

float

Returns:

clisi score

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